PEER REVIEWED PUBLICATIONS

Goldman AD, Weber JM, LaRowe DE, Barge LM (2023) Electron transport chains as a window into the earliest stages of evolution. Proc Natl Acad Sci U S A, 120(34):e2210924120

Cuevas-Zuviría B, Adam ZR, Goldman AD, Kaçar B (2023) Informatic capabilities of translation and its implications for the origins of life. Journal of Molecular Evolution, DOI:10.1007/s00239-023-10125-0

Goldman AD (2023) How did life become cellular? Proceedings of the Royal Society B. 290(1992):20222327

Goldman AD, Kaçar B (2023) Very early evolution from the perspective of microbial ecology. Environmental Microbiology, 25(1):5-10

Krishnamurthy R, Goldman AD, Liberles DA, Rogers KL, Tor Y (2022) Nucleobases in meteorites to nucleobases in RNA and DNA? Journal of Molecular Evolution, 90(5):328-331

Crapitto AJ, Campbell A, Harris A-J, Goldman AD (2022) A Consensus View of the Proteome of the Last Universal Common Ancestor. Ecology and Evolution, 12:e8930.

Gagler DC, Karas B, Kempes C, Goldman AD, Kim H, Walker SI (2022) Scaling laws in enzyme function reveal a new kind of biochemical universality. Proc. Natl. Acad. Sci. USA, 119(9):e2106655119.

Weber JM , Henderson BL, LaRowe DE, Goldman AD, Perl SM, Billings K, Barge LM (2022) Testing abiotic reduction of NAD+ directly mediated by iron-sulfur minerals. Astrobiology, 22:25-34.

Harris AJ, Goldman AD (2021) The very early evolution of protein translocation across membranes. PLoS Computational Biology, 17(3): e1008623

Goldman AD, Kaçar B (2021) Cofactors are remnants of life’s origin and early evolution. Journal of Molecular Evolution, 89:127–133.

Takagi YA, Nguyen DH, Wexler TB, Goldman AD (2020) The Coevolution of cellularity and metabolism following the origin of life Journal of Molecular Evolution, 88:598–617.

Harris AJ, Goldman AD (2020) The complex phylogenetic relationships of a 4mC/6mA DNA methyltransferase in prokaryotes. Molecular Phylogenetics and Evolution, 15:106837.

Maltais TR, VanderVelde D, LaRowe DE, Goldman AD, Barge LM (2020) Reactivity of Metabolic Intermediates and Cofactor Stability under Model Early Earth Conditions. Origins of Life and Evolution of Biospheres. doi: 10.1007/s11084-019-09590-9

Liberles DA, Chang B, Geiler-Samerotte K, Goldman AD, and 6 others (2020) Emerging Frontiers in the Study of Molecular Evolution. Journal of Molecular Evolution. 88:211-226.

Harris AJ, Goldman AD (2018) Phylogenetic Reconstruction Shows Independent Evolutionary Origins of Mitochondrial Transcription Factors from an Ancient Family of RNA Methyltransferase Proteins. Journal of Molecular Evolution. 86:277-282.

Goldman AD, Landweber LF (2016) What is a Genome? PLoS Genetics. 12:e1006181.

Goldman AD, Beatty JT , Landweber LF (2016) The TIM Barrel Architecture Facilitated the Early Evolution of Protein-Mediated Metabolism. Journal of Molecular Evolution. 82:17-26.

Domagal-Goldman SD, Wright KE, Adamala K, Arina de la Rubia L, Bond J, Dartnell LR, Goldman AD, Lynch K, Naud M-E, Paulino-Lima IG, and 29 others (2016) The Astrobiology Primer v2.0. Astrobiology. 16: 561-653.

Chen X, Bracht JR, Goldman AD, Landweber LF and others (2014) The architecture of a scrambled genome reveals massive levels of genomic rearrangement during development. Cell. 158:1187-98.

Goldman AD, Stein EM, Bracht JR, Landweber LF (2014) Programmed Genome Processing in Ciliates. In N Jonoska and M Saito (Ed.), Discrete and Topological Modeling in Molecular Biology. Berlin, Germany: Springer.

Goldman AD, Bernhard TM, Dolzhenko E, Landweber LF (2013) LUCApedia: a database for the study of ancient life. Nucleic Acids Research, 41:D1079-82.

Vogt A, Goldman AD, Mochizuki K, Landweber LF (2013) Transposon Domestication versus Mutualism in Ciliate Genome Rearrangements. PLoS Genetics, 9:e1003659.

Swart EC, Bracht JR, Magrini V, Minx P, Chen X, Zhou Y, Khurana JS, Goldman AD, Landweber LF and others (2013) The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome with 16,000 Tiny Chromosomes. PLoS Biology, 11:e1001473.

Bracht JR, Fang W, Goldman AD, Dolzhenko E, Stein EM*, Landweber LF (2013) Genomes on the edge: programmed genome instability in ciliates. Cell, 52:406.

Stüeken EE, Anderson RE, Bowman JS, Brazelton WJ, Colangelo-Lillis J, Goldman AD, Som SM, Baross JA (2013) Did life originate from a global chemical reactor?. Geobiology, 11:101-26.

Goldman AD, Landweber LF (2012) Oxytricha as a modern analog of ancient genome evolution. Trends in Genetics, 28:382-388.

Goldman AD, Baross JA, Samudrala R (2012) The enzymatic and metabolic capabilities of life forms during the origin of life. PLoS One, 7:e39912.

Goldman AD, Horst JA, Hung L-H, Samudrala R (2012) Evolution of the Protein Repertoire. Systems Biology, R Meyers, Editor. (pp. 207-237). Wienheim, Germany: Wiley-VCH.

Goldman AD, Samudrala R, Baross JA (2010). The evolution and functional repertoire of translation proteins following the origin of life. Biology Direct, 5:15.

Borlee BR, Goldman AD, Murakami K, Samudrala R, Wozniak DJ, Parsek MR (2010). Pseudomonas aeruginosa uses a cyclic-di-GMP-regulated adhesin to reinforce the biofilm extracellular matrix. Molecular Microbiology, 75:827-842. ** Cover Article

Goldman AD, Leigh JA, Samudrala R (2009) Comprehensive computational analysis of Hmd enzymes and paralogs in methanogenic Archaea. BMC Evolutionary Biology, 9:199.

OTHER PUBLICATIONS

Goldman AD, Liberles DA (2021) The Journal of Molecular Evolution Turns 50. J Mol Evol, 89:119–121

Goldman AD, Fournier G, Gogarten JP, Petrov AS, Rothschild L, Segrè D, Smith E, Williams L (2021) Understanding the Early Major Transitions in Evolutionary History Part 1: Stages in the Emergence of Complex Life. Bulletin of the American Astronomical Society, 53: 247.

Fournier G, Gogarten JP, Goldman AD, Petrov AS, Rothschild L, Segrè D, Smith E, Williams L (2021) Understanding the Early Major Transitions in Evolutionary History Part 2: Ancient Evolution of Biological Systems and the Biosphere. Bulletin of the American Astronomical Society, 53: 253.

Achenbach L, Barnes R, Baross J, Boston P, Boyd E, Cable M, Chen I, Ciesla F, Des Marais D, Domagal-Goldman S, Goldman A, and 17 others (2015) Astrobiology Strategy (Lindsay Hays, Ed.). NASA Astrobiology Program.

Goldman AD (2014) Astrobiology: an overview. In VM Kolb (Ed.) Astrobiology: An Evolutionary Approach. Boca Raton, FL: CRC Press.

Goldman AD (2014) Ancient Life in the Information Age. The Scientist. March issue, pp. 28-29.